Resumen
Introducción. Phytophthora infestans sensu lato es el fitopatógeno causante del tizón tardío en solanáceas, con impactos ambientales, económicos y de seguridad alimentaria. Presenta alta incidencia de la enfermedad y cambios genéticos acelerados. Objetivo. Evaluar la variabilidad genética de las poblaciones de P. infestans sensu lato aisladas de solanáceas en municipios del sur de Colombia. Materiales y métodos. Se obtuvieron 40 aislamientos de P. infestans sensu lato de cuatro hospederos de solanáceas provenientes de municipios de Nariño y Putumayo. Se extrajo el ADN y se amplificó con cinco marcadores microsatélites. Las bandas se visualizaron en geles de agarosa al 3% y se midieron con ImageJ. El análisis de datos se realizó con el paquete Poppr y el software STRUCTURE. Resultados. Se obtuvo alto polimorfismo con la amplificación de más de cuatro alelos por locus, presencia de triploidia y elevada diversidad genética con 40 genotipos multilocus únicos, en comparación con otras regiones del país. Las poblaciones se estructuraron de acuerdo a su hospedero con una diferenciación genética (Gst) entre 0.39 y 0.73, probablemente por la preferencia de hospedero y el uso de hospederos alternativos. El análisis de desequilibrio de ligamiento sugiere posible reproducción sexual en poblaciones P. infestans obtenidas de papa y P. betacei de tomate de árbol. Conclusión. El análisis con cinco marcadores microsatélites permitió identificar alto nivel de polimorfismo en las poblaciones de P. infestans sensu lato y alta variabilidad intrapoblacional para el sur de Colombia, así como estructura de las poblaciones de acuerdo a su hospedero.
Citas
Fry, W. E., Birch, P. R. J., Judelson, H. S., Grünwald, N. J., Danies, G., Everts, K. L., Gevens, A. J., Gugino, B. K., Johnson, D. A., Johnson, S. B., McGrath, M. T., Myers, K. L., Ristaino, J. B., Roberts, P. D., Secor, G., & Smart, C. D. (2015). Five reasons to consider Phytophthora infestans a reemerging pathogen. Phytopathology, 105(7), 966-981. https://doi.org/10.1094/PHYTO-01-15-0005-FI
https://doi.org/10.1094/PHYTO-01-15-0005-FI
Lindqvist-Kreuze, H., Gamboa, S., Izarra, M., Pérez, W., Correa, M. Y., Astete, A., Särkinen, T., Cueva, M., & Gonzáles, P. (2020). Population structure and host range of the potato late blight pathogen Phytophthora infestans in Peru spanning two decades. Plant Pathol, 69(2): 334-346. https://doi.org/10.1111/ppa.13125
https://doi.org/10.1111/ppa.13125
Mideros, M. F., Turissini, D. A., Guayazán, N., Ibarra-Avila, H., Danies, G., Cárdenas, M., Myers, K., Tabima, J., Goss, E. M., Bernal, A., Lagos, L. E., Grajales, A., Gonzalez, L. N., Cooke, D. E. L., Fry, W. E., Grünwald, N., Matute, D. R., & Restrepo, S. (2018). Phytophthora betacei, a new species within Phytophthora clade 1c causing late blight on Solanum betaceum in Colombia. Persoonia: Molecular Phylogeny and Evolution of Fungi, 41: 39-55. https://doi.org/10.3767/persoonia.2018.41.03
https://doi.org/10.3767/persoonia.2018.41.03
Forbes, G. A., Morales, J. G., Restrepo, S., Pérez, W., Gamboa, S., Ruiz, R., ... & Oliva, R. (2013). Phytophthora infestans and Phytophthora andina on Solanaceous hosts in South America. Phytophthora: a global perspective, 48-58.
https://doi.org/10.1079/9781780640938.0048
Fry, W. E. (2020). Phytophthora infestans: the itinerant invader; "late blight": the persistent disease. Phytoparasitica. 48(1): 87-94. Springer. https://doi.org/10.1007/s12600-019-00778-3
https://doi.org/10.1007/s12600-019-00778-3
Tian, Y. E., Yin, J. L., Sun, J. P., Ma, Y. F., Wang, Q. H., Quan, J. L., & Shan, W. X. (2016). Population genetic analysis of Phytophthora infestans in northwestern China. Plant Pathology, 65(1), 17-25. https://doi.org/10.1111/ppa.12392
https://doi.org/10.1111/ppa.12392
Mathew, D., Anju, P. S., Tom, A., Johnson, N., Lidia George, M., Davis, S. P., Ravisankar, V., & Asha, K. N. (2020). Genome-wide microsatellites and species specific markers in genus Phytophthora revealed through whole genome analysis. Biotech, 10(10). https://doi.org/10.1007/s13205-020-02430-y
https://doi.org/10.1007/s13205-020-02430-y
Chaves, S. C., Guayazán, N., Mideros, M. F., Parra, M., Lucca, F., & Restrepo, S. (2020). Two clonal species of Phytophthora associated to solanaceous crops coexist in central and Southern Colombia. Phytopathology, 110(7), 1342-1351. https://doi.org/10.1094/PHYTO-05-19-0175-R
https://doi.org/10.1094/PHYTO-05-19-0175-R
Oliva, R. F., Erselius, L. J., Adler, N. E., & Forbes, G. A. (2002). Potential of sexual reproduction among host‐adapted populations of Phytophthora infestans sensu lato in Ecuador. Plant Pathology, 51(6), 710-719.
https://doi.org/10.1046/j.1365-3059.2002.00784.x
Berdúo-Sandoval, J. E., Ruiz-Chután, J. A., & Sánchez-Pérez, A. (2019). Evaluación de la resistencia de genotipos de tomate frente a aislados de Phytophthora infestans provenientes de Guatemala. Ciencia, Tecnología y Salud, 6, 22-33.
https://doi.org/10.36829/63CTS.v6i1.672
Shimelash, D., & Dessie, B. (2020). Novel characteristics of Phytophthora infestans causing late blight on potato in Ethiopia. Current Plant Biology, 24. https://doi.org/10.1016/j.cpb.2020.100172
https://doi.org/10.1016/j.cpb.2020.100172
Griffith, G., & Shaw, D. (1998). Polymorphisms in Phytophthora infestans: four mitochondrial haplotypes are detected after PCR amplification of DNA from pure cultures or from host lesions. Appl Environ Microbiol, 64(10), 4007-4014.
https://doi.org/10.1128/AEM.64.10.4007-4014.1998
Li, Y., Cooke, D. E. L., Jacobsen, E., & van der Lee, T. (2013). Efficient multiplex simple sequence repeat genotyping of the oomycete plant pathogen Phytophthora infestans. J Microbiol Methods, 92(3), 316-322. https://doi.org/10.1016/j.mimet.2012.11.021
https://doi.org/10.1016/j.mimet.2012.11.021
Kamvar, Z. N., Tabima, J. F., & Gr̈unwald, N. J. (2014). Poppr: An R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction. PeerJ, 2014(1), 1-14. https://doi.org/10.7717/peerj.281
https://doi.org/10.7717/peerj.281
Hedrick, P. W. (2005). A standardized genetic differentiation measure. Evolution 59(8): 1633-1638.
https://doi.org/10.1111/j.0014-3820.2005.tb01814.x
Pritchard, J., Stephens, M., & Donnelly, P. (2000). Inference of population structure using multilocus genotype data. Genetics, 155(2), 945-959.
https://doi.org/10.1093/genetics/155.2.945
Wharton, P., Dangi, S., Begum, M. M., Douches, D., & Hokanson, K. E. (2023). Genotypic characterization of Phytophthora infestans populations in Bangladesh. Plant Pathology, 72(6), 1136-1148. https://doi.org/10.1111/ppa.13725
https://doi.org/10.1111/ppa.13725
Martin, F., Zhang, Y., Cooke, D., Coffey, M., Grünwald, N., & Fry, W. (2019). Insights into evolving global populations of Phytophthora infestans via new complementary mtDNA haplotype markers and nuclear SSRs. PLoS ONE, 14(1).
https://doi.org/10.1371/journal.pone.0208606
De Miccolis Angelini, R. M., Pollastro, S., & Faretra, F. (2015). Genetics of Fungicide Resistance. En Fungicide Resistance in Plant Pathogens (pp. 13-34). Springer Japan. https://doi.org/10.1007/978-4-431-55642-8_2
https://doi.org/10.1007/978-4-431-55642-8_2
Knaus, B. J., Tabima, J. F., Shakya, S. K., Judelson, H. S., & Grünwald, N. J. (2020). Genome-wide increased copy number is associated with emergence of dominant clones of the Irish potato famine pathogen Phytophthora infestans. mBio, 11(3), 1-13. https://doi.org/10.1128/mBio.00326-20
https://doi.org/10.1128/mBio.00326-20
Li, Y., Shen, H., Zhou, Q., Qian, K., Van Der Lee, T., & Huang, S. (2017). Changing ploidy as a strategy: The Irish potato famine pathogen shifts ploidy in relation to its sexuality. MPMI, 30(1), 45-52. https://doi.org/10.1094/MPMI-08-16-0156-R
https://doi.org/10.1094/MPMI-08-16-0156-R
Dangi, S., Wharton, P., Ambarwati, A. D., Santoso, T. J., Kusmana, Sulastrini, I., Medendorp, J., Hokanson, K., & Douches, D. (2021). Genotypic and phenotypic characterization of Phytophthora infestans populations on Java, Indonesia. Plant Pathology, 70(1), 61-73. https://doi.org/10.1111/ppa.13269
https://doi.org/10.1111/ppa.13269
Olave-Achury, A., Cardenas, D., Restrepo, S., Lucca, F., Fry, W. E., Myers, K. L., Danies, G., & Soto-Suarez, M. (2022). Phenotypic and genotypic characterization of Phytophthora infestans isolates associated with tomato and potato crops in Colombia. Phytopathology, 112(8), 1783-1794. https://doi.org/10.1094/PHYTO-04-21-0158-R
https://doi.org/10.1094/PHYTO-04-21-0158-R
Hassan, S., Xie, B., Li, Y., Hao Li, H., Ling, J., Yaseen, M., Shahid Iqbal, M., Kun, Q., & Ibrahim Tahir, M. (2020). Population Genetic Analysis of Phytophthora infestans in Sichuan, Southwestern China. PREPRINT available at Research Square https://doi.org/10.21203/rs.3.rs-52556/v1
Kanetis, L. I., Pittas, L., Nikoloudakis, N., Cooke, D. E. L., & Ioannou, N. (2021). Characterization of Phytophthora infestans Populations in Cyprus, the Southernmost Potato-Producing European Country. Plant Dis, 105(11), 3407-3417. https://doi.org/10.1094/PDIS-12-20-2694-RE
https://doi.org/10.1094/PDIS-12-20-2694-RE
Chaves, S. C., Rodríguez, M. C., Mideros, M. F., Lucca, F., Ñústez, C. E., & Restrepo, S. (2019). Determining whether geographic origin and potato genotypes shape the population structure of Phytophthora infestans in the central region of Colombia. Phytopathology, 109(1), 145-154. https://doi.org/10.1094/PHYTO-05-18-0157-R
https://doi.org/10.1094/PHYTO-05-18-0157-R
Vargas, A. M., Quesada Ocampo, L. M., Céspedes, M. C., Carreño, N., González, A., Rojas, A., Zuluaga, A. P., Myers, K., Fry, W. E., Jiménez, P., Bernal, A. J., & Restrepo, S. (2009). Characterization of Phytophthora infestans populations in Colombia: First report of the A2 mating type. Phytopathology, 99(1), 82-88. https://doi.org/10.1094/PHYTO-99-1-0082
https://doi.org/10.1094/PHYTO-99-1-0082
Kosman, E., & Jokela, J. (2019). Dissimilarity of individual microsatellite profiles under different mutation models: Empirical approach. Ecol Evol, 9(7), 4038-4054. https://doi.org/10.1002/ece3.5032
https://doi.org/10.1002/ece3.5032
Kröner, A., Mabon, R., Corbière, R., Montarry, J., & Andrivon, D. (2017). The coexistence of generalist and specialist clonal lineages in natural populations of the Irish Famine pathogen Phytophthora infestans explains local adaptation to potato and tomato. Molecular Ecology, 26(7), 1891-1901. https://doi.org/10.1111/mec.14004
https://doi.org/10.1111/mec.14004
Michalska, A. M., Sobkowiak, S., Flis, B., & Zimnoch-Guzowska, E. (2016). Virulence and aggressiveness of Phytophthora infestans isolates collected in Poland from potato and tomato plants identified no strong specificity. Eur J Plant Pathol, 144(2), 325-336. https://doi.org/10.1007/s10658-015-0769-6
https://doi.org/10.1007/s10658-015-0769-6
Leesutthiphonchai, W., Vu, A. L., Ah-Fong, A. M. V., & Judelson, H. S. (2018). How does Phytophthora infestans evade control efforts? Modern insight into the late blight disease. Phytopathology, 108(8), 916-924. https://doi.org/10.1094/PHYTO-04-18-0130-IA
https://doi.org/10.1094/PHYTO-04-18-0130-IA
Adler, N. E., Chacón, G., Flier, W. G., & Forbes, G. A. (2002). The Andean fruit crop, pear melon (Solanum muricatum) is a common host for A1 and A2 strains of Phytophthora infestans in Ecuador. Plant Pathology. 51(6).
https://doi.org/10.1046/j.1365-3059.2002.00772.x
Kiiker, R., Skrabule, I., Ronis, A., Cooke, D. E. L., Hansen, J. G., Williams, I. H., Mänd, M., & Runno-Paurson, E. (2019). Diversity of populations of Phytophthora infestans in relation to patterns of potato crop management in Latvia and Lithuania. Plant Pathology, 68(6), 1207-1214. https://doi.org/10.1111/ppa.13030
https://doi.org/10.1111/ppa.13030
Runno-Paurson, E., Agho, C. A., Zoteyeva, N., Koppel, M., Hansen, M., Hallikma, T., Cooke, D. E. L., Nassar, H., & Niinemets, Ü. (2022). Highly diverse Phytophthora infestans populations infecting potato crops in Pskov region, North-West Russia. J Fungi, 8(5). https://doi.org/10.3390/jof8050472
https://doi.org/10.3390/jof8050472
Runno-Paurson, E., Kiiker, R., Joutsjoki, T., & Hannukkala, A. (2016). High genotypic diversity found among population of Phytophthora infestans collected in Estonia. Fungal Biol, 120(3), 385-392. https://doi.org/10.1016/j.funbio.2015.11.008
https://doi.org/10.1016/j.funbio.2015.11.008
Alor, N., Tierno, R., Cooke, D. E. L., & de Galarreta, J. I. R. (2019). Characterisation of Phytophthora infestans Isolates of Potato Crops from Spain. Potato Res, 62(4), 453-463. https://doi.org/10.1007/s11540-019-9422-7
https://doi.org/10.1007/s11540-019-9422-7
Maurice, S., Montes, M. S., Nielsen, B. J., Bødker, L., Martin, M. D., Jønck, C. G., Kjøller, R., & Rosendahl, S. (2019). Population genomics of an outbreak of the potato late blight pathogen, Phytophthora infestans, reveals both clonality and high genotypic diversity. Mol Plant Pathol, 20(8), 1134-1146. https://doi.org/10.1111/mpp.12819
Esta obra está bajo una licencia internacional Creative Commons Atribución-CompartirIgual 4.0.
Derechos de autor 2024 REVISTA DE LA ASOCIACION COLOMBIANA DE CIENCIAS BIOLOGICAS